Basic Information
VIS ID
TVIS10020537
Fusion event
HBV-LINC00314 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1165
End
2261
Orient
+
Integrated sequence
CAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCT
Host Sequence
Chromosome
chr21
Cytoband
q21.3
Reference genome
End
29392796/28020477 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7c/Upstream/1065386; hsa-mir-3197/Downstream/2354817;
Upstream sequence
cctgagtctgcagccgctgtttgggcagttgcagctgtgcctgggagtggggcaggactcctgcctgctccacggagcgaggctgtgtatgcagctgtgg
Downstream sequence
tgacctcgtgatccacccgcctcggcctcccaaactgctgggattacaggcgtgagctaccgtgcctggccACATATATAGTTCTAAACACAAACACACA
Target sequence
tttgggcagctgcagcagcacccggggagctaccaccccaactcagaaggggtggggctccagcttgtccatggtcccctggctccacacagtaggcagccccaaccgcacctccctgctccagccgggtgatggcagtggcAGGTTGTCTGGAGGGCTGCTACCATCACAGGAATCAAATGAAAGTAAAAGTAAGCCATAGTGCTTAGAACGGTTTCAGACAGGACAGAAGCCAAATTACAAAAAGATGGAGGC
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
Curate