Basic Information
VIS ID
TVIS10020538
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1176
End
2272
Orient
+
Integrated sequence
CAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTC
Host Sequence
Chromosome
chr18
Cytoband
p11.21
Reference genome
End
15060463/15060464 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-3156-2/Upstream/229174; hsa-mir-1-2/Downstream/6623054;
Upstream sequence
TAACTTTACATTGTTGGTAGTAGTTTCTACAGATCCAGTTTATTGCATGTCGTATCTTTATTGTAGATATTAAAAACACATGATAAAAATTGATGTGTGC
Downstream sequence
gccatcacccggctggagcagggaggcgtggttggggctgcctactgtgtggagccaggggaccgtggacaagctggagccccaccccttctgagttggg
Target sequence
tctctctctgtgtgtgtgtgtctgtgtgtgtctctgtgtgtgtgtTTAGAACTATATATGTggccaggtgtggtggctcatgcctgtaatcccagccctttgggaggccaaggcaggcagctcacgaggtcaggagatcgagaccatcctggctaacacagtgaaaccccatctctactaaaaaatacaaaagaaattagccgggtgtggtgggcacttgtagtcccagctacgtgggaggctgaggcaggagaa
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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