Basic Information
VIS ID
TVIS10020544
Fusion event
HBV-chr9 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1171
End
2267
Orient
+
Integrated sequence
TCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCT
Host Sequence
Chromosome
chr9
Cytoband
q33.1
Reference genome
GRCh37/hg19
Start
121291693/118529415 (Hg38)
End
121292741/118530463 (Hg38)
Orient
+
Nearest miRNA
hsa-let-7a-1/Upstream/4319886; hsa-mir-12126/Downstream/1714516;
Nearest TSS
ENST00000422679/Upstream/632159; ENST00000456032/Downstream/175497;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/784051, chr9-CpG: 97/Downstream/838345
Nearby gene
LOC105376248(-5918) ;
Upstream sequence
CTTGTAAATTACTCGGACAAGGCCATCAGTATTTCACCGTTTTTTCCTAGCTCCTTAAAATATTGAAAACAGTGCTCAGTACAGTGCTTCCACTCCATAA
Downstream sequence
TCAACTGGAATCTATAGGAATCCCATGTTGGAATGAAAAGGGCATGAATACTTGCTTTAAAAATATTATCTTATTCTCATTTGATATTAATTTTGGTTTG
Target sequence
GGTGTTGATGAcagaggacttcatggtgagtgaaacaataacatggaatcggaaacctttggcccagatttcgtttctggtgctaatcccagggtgctcacccttgggaaagccactttacctctttgagctctgttcttttatgagtaaaatgtagtcatcaagactaattttatagaacttctgtaaggatagattagaagatagttaatgcagaacatagcacatcttggtaatttaagaaatattTCTTGG
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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