Basic Information
VIS ID
TVIS10020553
Fusion event
HBV-chr21 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1165
End
2261
Orient
+
Integrated sequence
CAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCT
Host Sequence
Chromosome
chr21
Cytoband
q11.2
Reference genome
End
14684590/13312269 (Hg38)
Orient
-
Nearest miRNA
hsa-mir-10396a/Upstream/4323556; hsa-let-7c/Downstream/94115;
Upstream sequence
ctgagtctgtagccgctgtttgggcagctgcagctgcacccgggagtggggcaggactcctgcctgctccacggagcgaggctgggtatgcagccctggt
Downstream sequence
tcctgacctcgtgagctgcctgccttggcctcccaaagtgctgggattaccggcgtgagccaccacacctggccACATATATAGTTCTAAacacacacac
Target sequence
ttgggcagctgcagcagcacccggggagctaccaccccaactcagaaggggtggggctccagcttgtccacagtcccctggctccacacagtaggcagccccaaccgcgcctccctgctccagccgggtgatggcAGTGGCAGGTTGTCTGGAGGGCTGCTACCATCACGGGAACCAAATGAAAGTAAAAGTAAGCCACAGTGCTTAGAACGGTTTCAGACAGGACAGAAGCCAAATTACAAAAAGATGGAGGCA
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
Curate