Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020564
Fusion event
HBV-DAB1 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1295
End
2391
Orient
+
Integrated sequence
TGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACGCGGTCTCCCC
Host Sequence
Chromosome
chr1
Cytoband
p32.2
Reference genome
Start
End
57907098/57441426 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/2214655; hsa-mir-101-1/Downstream/2291801;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/15413, chr1-CpG: 87/Downstream/808174
Upstream sequence
GTCTTCCTTTCTCTCTATCAATTCCTTCTTCCTCTCTTTTCATCTGTTATTCATATTAAATAATTTACCCTTAAGAAGGCAATGCTCtttcctttttttt
Downstream sequence
ctcattgcactctcaacctcccaggctcaagcgatcctgccactcagcccaccaagtagctgggactacaggcacacaccaccacacctgcctaattttt
Target sequence
TCCACCTTGAACAGTCATCCATCAAAGGCATATAAGGAGCACCTTTCGAAGAGATGGGAACTTCTTACATTCAGGGATACCCAGACAGTAATCCAGCCAGGGCTTGTGAAGAAAGACAGGTAAGTGGTGACTGAGCaaagaggaaaggaaggaagaaagaaaggagagagggaaggaagaaaggagggagggagggaggaaggaagaatggaaAAGAGGATTGTGGTTTAGGGGATGTTACCAAAGGATGCTAAA
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.