Basic Information
VIS ID
TVIS10020565
Fusion event
HBV-LOC101927293 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1285
End
2381
Orient
+
Integrated sequence
CAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGCGCTGAATCCCGCGGACGACCCGTCTCGGGGCCGTTTGGGCCTCTACCGTCCCCTTCTTCATCTGCCGTTCCGGCCGACCACGGGGCGCACCTCTCTTTACG
Host Sequence
Chromosome
chr6
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
58419253/58092975 (Hg38)
End
58420301/58094023 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC101927293
Nearest miRNA
hsa-mir-10398/Upstream/702763; hsa-mir-10524/Downstream/13282937;
Nearest TSS
ENST00000381078/Upstream/54509; ENST00000622616/Downstream/2629125;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/131425, chr6-CpG: 45/Downstream/4191927
Upstream sequence
CTCTTTCCCTATTTATTAGCTTCTGTTTCTATCTCAGATGCTAAAAGAAGTAGTGTGGTGTTTTTATGAAAAGAAAATATCAATGTTTCCCTTCTTCACT
Downstream sequence
tcatcttcccccaaaggaactctgcacttattacacaaaaattcActttctgcccttccctttctgcctaaaagcaaggcataaatttccctttgtaaag
Target sequence
TAGGAAAgcctgtctgcctgcctgcctgcctgcctgcctccctccctccctccctcccttccttccttcctTCCACTGTTGTTAgcccgggctggaatgcaatggtgctatcttggctcactgcaacctccgcctcctgagttccagcgattctcttgcctcagcctcccgaatagctgggattacaggtgcatgccaccacacccagctaatttttgtatttttcagtagagatggggtttcaccatgttcgcc
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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