Basic Information
VIS ID
TVIS10020577
Fusion event
HBV-MIR3142HG integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1105
End
2201
Orient
+
Integrated sequence
CTTACAAGGCCTTTCTGTGTAAACAATATCTAAACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAAT
Host Sequence
Chromosome
chr5
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
159895805/160468798 (Hg38)
End
159896853/160469846 (Hg38)
Orient
+
Location type
Intronic
Target gene
MIR3142HG
Nearest miRNA
hsa-mir-10397/Upstream/5639258; hsa-mir-103a-1/Downstream/4556;
Nearest TSS
ENST00000502646/Upstream/530; ENST00000523598/Downstream/133445;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/46692, chr5-CpG: 68/Downstream/1077840
Upstream sequence
AGATGTATACTTTAGACATTGCAAATAGAAAGTGGTATATAAATTATAGACCTAAAATTTTTAATACATCAAAAACGGATGTTTTTACATCAGTTTACAT
Downstream sequence
CCACTTTCTCCAAAGGCCCTGCGGGAATCAGACGCATGCACTTCTTCAGTTCTGTGTAGTTTTAGGTTCTCAGTGGAGGCCTTTGGGCTCAACTTGTAGT
Target sequence
TGCTTTAAACCTGGAGTTGTAGACTGTGGTCTCTATTTAGCAAGTCATAAACTTTCTTGCAGTGACAATAGCATGAAAATATTGGACAGTAAATATGGTGCTCTTAGGAGGTTTCAGGGTTGGAAGACTATGGCTATTACTTTTTGTTTATTGTGTTCCTATTCTCAATTTCAATCTTGTCTTTGGATAGTAAGaattttttttaaattttctatttttttaaaaaGAATCTTTTACATACTGAACCTGACTTGT
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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