Basic Information
VIS ID
TVIS10020589
Fusion event
HBV-chr18 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1136
End
2232
Orient
+
Integrated sequence
AAACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGC
Host Sequence
Chromosome
chr18
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
15203803/15203804 (Hg38)
End
15204851/15204852 (Hg38)
Orient
+
Nearest miRNA
hsa-mir-3156-2/Upstream/373562; hsa-mir-1-2/Downstream/6478666;
Nearest TSS
ENST00000575820/Upstream/39337; ENST00000579454/Downstream/5750018;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/5494, chr18-CpG: 62/Downstream/125457
Nearby gene
LOC112268217(-5552) ;
Upstream sequence
CTCAGGACTCCTTAGTCTCCATAGCATTTACTCCCAGCTTCCAGCTTGGGGgtttactacctaatggctccaactagaatgtaagcctcatgaaagaaag
Downstream sequence
ccactcactgcaagctccatctcccggcttcatgccattcttctgcttcagcctcccgagtagctgggactacaggcgcccgccatcacgtccagctaat
Target sequence
tactctccctgtgtgtatgtctccctctactcaaatttcttttttttataaggacatcagtcatattgaattcaggctcatctgattttatcttaacttgatcacctgcaaagaacctttttcctaatgagatcatattcagtggttaagatttcagcatctatatagaggaaacaatttagctcatatctgtgcatacatgattgtaatagctatgtcttccaaaagcgttgacccccttgttactactgtata
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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