Basic Information
VIS ID
TVIS10020593
Fusion event
HBV-chr7 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1133
End
2229
Orient
+
Integrated sequence
TCTAAACCTTTACCCCGTTGCCCGGCAACGGTCAGGTCTCTGCCAAGTGTTTGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTG
Host Sequence
Chromosome
chr7
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
57934625/57874919 (Hg38)
End
57935673/57875967 (Hg38)
Orient
+
Fragile sites / regions
FRA7A
Nearest miRNA
hsa-mir-1183/Upstream/469829; hsa-mir-10399/Downstream/5745123;
Nearest TSS
ENST00000635602/Upstream/424742; ENST00000418297/Downstream/5178464;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/5477, chr7-CpG: 167/Downstream/210457
Nearby gene
LOC102723842(-6785) ;
Upstream sequence
gagggttagaacttaaacatgaatttttgaggtacacaatttaacctgtaataCACCATATtatgtctatatttatttatttataaattatttggatcca
Downstream sequence
tctctgctcactgcaagctctatctcctggcttcatgccattcttctgcttcagcctcccgagtagctgggactacaggcgcctgccatcacgcccagct
Target sequence
gaactctccctgtgtgtatatctccctctactcaaatttcttctttttataaggacatcagtcatactgaattcaggctcatctgattttatcttaatttaatcacctgcaaataacctgtttcctaatgagttcatattcagtggttaggatttcagcatctgtatagaggaaacaatttagctcatatctgtgcatacatgattgtaatagctatgtcttctgaaagcgttgaccccttattactacaatata
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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