Basic Information
VIS ID
TVIS10020605
Fusion event
HBV-chr9 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
27339696
Virus Sequence
Virus name
HBV
Reference genome
NC_003977.1
Start
1184
End
2280
Orient
+
Integrated sequence
TGCTGACGCAACCCCCACGGGTTGGGGCTTGGCCATAGGCCATCGGCGCATGCGTGGAACCTTTGTGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCAGCTTGTTTTGCTCGCAGCCGGTCTGGAGCGAAACTTATCGGAACCGACAACTCAGTTGTCCTCTCTCGGAAATACACCTCCTTTCCATGGCTGCTAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTCTACGTCCCGTCGGC
Host Sequence
Chromosome
chr9
Cytoband
q34.11
Reference genome
GRCh37/hg19
Start
132117848/129355569 (Hg38)
End
132118896/129356617 (Hg38)
Orient
+
Nearest miRNA
hsa-let-7a-1/Upstream/962855; hsa-mir-12126/Downstream/512988;
Nearest TSS
ENST00000422679/Upstream/13726; ENST00000439014/Downstream/81599;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/3145, chr9-CpG: 67/Downstream/26680
Nearby gene
LINC01503(-8092) ; LOC107987038(+9439) ;
Upstream sequence
GAGGAGTAAATTGTATAACTTAAGATCtaattatataatttatttgtaattattaaatgtttattttGTACTTATTATATGAGAGGAGCTATATGAGGTA
Downstream sequence
ccgtctctactaaaatacaaaaaattagctgggcatggtcacgtgctcctgtagtcccagctacttgggagggtgaggcaggagaattgcttgaatccgg
Target sequence
gcctggcACTGTCTGAATGCATACAGCTGGTAAGTGTGAACCCAGGCAGATCCCAAATGGTAGCTGTCTTGACGGTTGTTAGAAAAGGGCTTCAAAGTGGAGACTTTCTATGATCTTCCCTTCCCAAGTGGAAAGGGAGGCAGAAGGATGCTCCAGGCGCACCCCAAACAGcagttatctgctgccatgtgacaagccaccccaaacacagtggctcaaaataatcatgtattggactctcttatgattctgggg
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
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