hsa-mir-4646-5p _LIHC.png
hsa-mir-541-5p _LIHC.png
hsa-mir-891b _LIHC.png
hsa-mir-3202 _LIHC.png
hsa-mir-892b _LIHC.png
CCND1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10020609
Fusion event
HBV-CCND1 integration
Validated
No
Detection method
VirusScan
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Good
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Start
1
End
1049
Orient
-
Integrated sequence
TCCACAACATTCCACCAAGCTCTGCTAGATCCCAGAGTGAGGGGCCTATATTTTCCTGCTGGTGGCTCCAGTTCCGGAACAGTAAACCCTGTTCCGACTACTGCCTCACCCATATCGTCAATCTTCTCGAGGACTGGGGACCCTGCACCGAACATGGAGAGCACAACATCAGGATTCCTAGGACCCCTGCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCACAGAGTCTAGACTCG
Host Sequence
Chromosome
chr11
Cytoband
q13.3
Reference genome
End
69467281/69652513 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
hsa-mir-20a-5p ; hsa-mir-195-5p ; hsa-mir-193b-3p ; hsa-mir-424-5p ; hsa-mir-16-1-3p ; hsa-mir-34a-5p ; hsa-mir-503-5p ; hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-let-7b-5p ; hsa-mir-19a-3p ; hsa-mir-302a-3p ; hsa-mir-15b-5p ; hsa-mir-449a ; hsa-mir-17-5p ; hsa-mir-302c-3p ; hsa-mir-106b-5p ; hsa-let-7e-5p ; hsa-mir-365a-3p ; hsa-mir-19b-1-5p ; hsa-mir-520b ; hsa-mir-34b-3p ; hsa-mir-338-3p ; hsa-mir-9-5p ; hsa-mir-374b-5p ; hsa-mir-425-5p ; hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-183-5p ; hsa-mir-93-5p ; hsa-mir-26b-5p ; hsa-let-7f-5p ; hsa-mir-196a-5p ; hsa-mir-92a-3p ; hsa-mir-138-5p ; hsa-mir-106a-5p ; hsa-mir-27a-3p ; hsa-mir-383-5p ; hsa-mir-490-3p ; hsa-mir-603 ; hsa-mir-142-5p ; hsa-mir-340-5p ; hsa-mir-448 ; hsa-mir-548k ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-3973 ; hsa-mir-5590-3p ; hsa-mir-548av-5p ; hsa-mir-8054 ; hsa-mir-6077 ; hsa-mir-214-5p ; hsa-mir-558 ; hsa-mir-1234-3p ; hsa-mir-4524a-5p ; hsa-mir-4694-3p ; hsa-mir-4524b-5p ; hsa-mir-1199-3p ; hsa-mir-6735-3p ; hsa-mir-6748-3p ; hsa-mir-6874-5p ; hsa-mir-7107-5p ; hsa-mir-497-5p ; hsa-mir-545-3p ; hsa-mir-4311 ; hsa-mir-4672 ; hsa-mir-6838-5p ; hsa-mir-8066 ; hsa-mir-3157-5p ; hsa-mir-4691-3p ; hsa-mir-758-5p ; hsa-mir-374a-5p ; hsa-mir-4708-5p ; hsa-mir-4756-3p ; hsa-mir-193a-3p ; hsa-mir-4691-5p ; hsa-mir-6792-3p ; hsa-mir-655-5p ; hsa-mir-4709-3p ; hsa-mir-20b-5p ; hsa-mir-520a-3p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-491-3p ; hsa-mir-216b-3p ; hsa-mir-6500-3p ; hsa-mir-593-3p ; hsa-mir-204-3p ; hsa-mir-494-3p ; hsa-mir-4261 ; hsa-mir-4646-5p ; hsa-mir-4666a-5p ; hsa-mir-4781-3p ; hsa-mir-708-5p ; hsa-mir-29a-3p ; hsa-mir-24-3p ; hsa-mir-152-3p ; hsa-mir-206 ; hsa-mir-3907 ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-7706 ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-516b-5p ; hsa-mir-1299 ; hsa-mir-563 ; hsa-mir-380-5p ; hsa-mir-1193 ; hsa-mir-8069 ; hsa-mir-4537 ; hsa-mir-202-3p ; hsa-mir-2392 ; hsa-let-7c-5p ; hsa-let-7g-5p ; hsa-let-7a-5p ; hsa-let-7d-5p ; hsa-mir-4500 ; hsa-mir-98-5p ; hsa-let-7i-5p ; hsa-mir-4458 ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-3191-5p ; hsa-mir-513a-5p ; hsa-mir-7112-3p ; hsa-mir-6875-5p ; hsa-mir-3126-5p ; hsa-mir-1253 ; hsa-mir-3663-5p ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-7845-5p ; hsa-mir-518c-5p ; hsa-mir-9500 ; hsa-mir-6873-5p ; hsa-mir-5197-3p ; hsa-mir-95-3p ; hsa-mir-6500-5p ; hsa-mir-4633-3p ; hsa-mir-574-5p ; hsa-mir-5010-3p ; hsa-mir-147a ; hsa-mir-6818-5p ; hsa-mir-6867-5p ; hsa-mir-223-5p ; hsa-mir-5087 ; hsa-mir-298 ; hsa-mir-4748 ; hsa-mir-4464 ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-3714 ; hsa-mir-548an ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-593-5p ; hsa-mir-145-3p ; hsa-mir-676-5p ; hsa-mir-5009-3p ; hsa-mir-4715-5p ; hsa-mir-541-5p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-556-5p ; hsa-mir-4796-3p ; hsa-mir-891b ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-369-3p ; hsa-mir-944 ; hsa-mir-1257 ; hsa-mir-323b-3p ; hsa-mir-646 ; hsa-mir-6768-5p ; hsa-mir-4746-3p ; hsa-mir-3648 ; hsa-mir-875-3p ; hsa-mir-4797-5p ; hsa-mir-466 ; hsa-mir-3941 ; hsa-mir-4643 ; hsa-mir-4735-3p ; hsa-mir-4789-3p ; hsa-mir-18b-5p ; hsa-mir-18a-5p ; hsa-mir-3189-5p ; hsa-mir-4758-3p ; hsa-mir-5699-5p ; hsa-mir-1915-5p ; hsa-mir-6884-3p ; hsa-mir-3922-5p ; hsa-mir-2861 ; hsa-mir-34a-3p ; hsa-mir-3940-5p ; hsa-mir-34c-5p ; hsa-mir-101-3p ; hsa-mir-146a-5p ; hsa-mir-576-3p ; hsa-mir-211-5p ; hsa-let-7a-3p ; hsa-mir-892b ; hsa-mir-1243 ; hsa-mir-1273f ; hsa-mir-1276 ; hsa-mir-1293 ; hsa-mir-224-5p ; hsa-mir-3147 ; hsa-mir-3148 ; hsa-mir-3153 ; hsa-mir-3170 ; hsa-mir-3179 ; hsa-mir-3202 ; hsa-mir-323a-5p ; hsa-mir-342-5p ; hsa-mir-3919 ; hsa-mir-432-3p ; hsa-mir-4425 ; hsa-mir-4483 ; hsa-mir-4533 ; hsa-mir-4651 ; hsa-mir-4664-5p ; hsa-mir-4716-3p ; hsa-mir-4720-3p ; hsa-mir-4804-3p ; hsa-mir-5572 ; hsa-mir-5587-5p ; hsa-mir-608 ; hsa-mir-625-5p ; hsa-mir-651-3p ; hsa-mir-653-3p ; hsa-mir-668-3p ; hsa-mir-6733-5p ; hsa-mir-6737-5p ; hsa-mir-6739-5p ; hsa-mir-6747-5p ; hsa-mir-6794-5p ; hsa-mir-6812-5p ; hsa-mir-6819-5p ; hsa-mir-6855-5p ; hsa-mir-6885-3p ; hsa-mir-8068 ; hsa-mir-8080 ; hsa-mir-876-3p ; hsa-mir-3135a ; hsa-mir-4666a-3p ; hsa-mir-4803
Nearest miRNA
hsa-mir-10392/Upstream/568207; hsa-let-7a-2/Downstream/631442;
Nearest cancer related gene
CCND1(OG, No orient, 0)
Upstream sequence
TGAGGCCCTAGGACAGGTGATGGTGTTGGGGAGAGATGGGACGGTAGCTCAGAAGAGAAATGGGAGGACAGGTGCCCTCCTGGCGATTGTGCATAGTAGC
Downstream sequence
TGATAAGTTCCTTTCCTTTTCTTTAAAGAAGTTGAAGTTTAGGAATCCTTTGGTGCCAACTGGTGTTTGAAAGTAGGGACCTCAGAGGTTTACCTAGAGA
Target sequence
AAAAGATTACCCAAAAACTGTCTTTAAAAGAGAGAGAGAGAAAAAAAAAATAGTATTTGCATAACCCTGAGCGGTGGGGGAGGAGGGTTGTGCTACAGATGATAGAGGATTTTATACCCCAATAATCAACTCGTTTTTATATTAATGTACTTGTTTCTCTGTTGTAAGAATAGGCATTAACACAAAGGAGGCGTCTCGGGAGAGGATTAGGTTCCATCCTTTACGTGTTTAAAAAAAAGCATAAAAACATTTTAA
Reference
Cao, S., et al.Divergent viral presentation among human tumors and adjacent normal tissues. Sci Rep,2016, 6: 28294.
Curate