Basic Information
VIS ID
TVIS20000009
Fusion event
HPV-LOC102723338 integration
Validated
Yes
Detection method
PCR Ion Torrent Sequencing
Data source
Curated
Sample type
Disease
Cervical intraepithelial neoplasia (CIN)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Host Sequence
Chromosome
chr4
Cytoband
q21.23
Reference genome
End
85671277/84531100 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-12113/Upstream/1777670; hsa-mir-1243/Downstream/1191368;
Upstream sequence
tcattgtaaattcactgaacttgatcactgtgctggggttaagtaagataatatctctattcctataaaatatacactgaaggccaggagtggtgactca
Downstream sequence
cccctgtaatcccagcacttcatgaggccaaggtgggaggatcacttgaggccaggagtttaagatcagcttaggcaaagctgaggctggaggatcacat
Reference
Bodelon, C., et al. Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer. Carcinogenesis.2016, 37(2): 188-196.
Curate