SERPINB9 _CESC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20000020
Fusion event
HPV-SERPINB9 integration
Validated
Yes
Detection method
PCR Ion Torrent Sequencing
Data source
Curated
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26660085
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.4
Host Sequence
Chromosome
chr6
Cytoband
p25.2
Reference genome
NCBI36/hg18
Start
2847972/2902739 (Hg38)
End
2847972/2902739 (Hg38)
Location type
Intronic
Target gene
SERPINB9
miRNAs that regulate target gene
hsa-mir-29a-3p ; hsa-mir-335-5p ; hsa-mir-9-5p ; hsa-mir-127-3p
Nearest miRNA
hsa-mir-4645/Upstream/48632; hsa-mir-10398/Downstream/2245494;
Nearest TSS
ENST00000381078/Upstream/21332; ENST00000437718/Downstream/541;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/10791, chr6-CpG: 77/Downstream/202
Upstream sequence
acatagctgacattattacaggcgtgggccaccatgcccggctaatttctgtatttttagtagagaccggttttcaccacgtttgccagactggtctcga
Downstream sequence
actcctgatctccaaggatccgaccgccttggcctcccaaagtgctgggattacaggcgtgagccactgcgcccggccGAGACTGGTGACTGTAAAGGAC
Reference
Bodelon, C., et al. Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer. Carcinogenesis.2016, 37(2): 188-196.
Curate