Basic Information
VIS ID
TVIS20000023
Fusion event
HPV-chr10:p14 integration
Validated
Yes
Detection method
PCR Ion Torrent Sequencing
Data source
Curated
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26660085
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.4
Host Sequence
Chromosome
chr10
Cytoband
p14
Reference genome
NCBI36/hg18
Start
8648393/8566424 (Hg38)
End
8648393/8566424 (Hg38)
Nearest miRNA
hsa-mir-3155a/Upstream/2414147; hsa-mir-107/Downstream/3564336;
Nearest TSS
ENST00000439456/Upstream/165564; ENST00000447297/Downstream/331565;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/52285, chr10-CpG: 72/Downstream/840751
Nearby gene
LOC105376398(+6323) ;
Upstream sequence
GGGCTAAACCCTGTGAACCTAGAGATTGAAGCCTGACTTGGTAAATGCATTCATGATCTCTAAAGGCTAGGAGACTTAGAAGGCTTAGACTGGGTCTACA
Downstream sequence
AGTAACACTGAAGTAAATGAGCTGTCTCATGGGCAAGTGGGGTAGGCAGCTGtttctttctttctttttttctttttttcagagtctcgctctgtcatca
Reference
Bodelon, C., et al. Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer. Carcinogenesis.2016, 37(2): 188-196.
Curate