Basic Information
VIS ID
TVIS20000025
Fusion event
HPV-chr9:q34.3 integration
Validated
Yes
Detection method
APOT and sequencing
Data source
Curated
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26660085
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.4
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
NCBI36/hg18
Start
138625713/136611440 (Hg38)
End
138625713/136611440 (Hg38)
Nearest miRNA
hsa-let-7a-1/Upstream/65181; hsa-mir-126/Downstream/59162;
Nearest TSS
ENST00000422679/Upstream/62310; ENST00000492862/Downstream/4197;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/64360, chr9-CpG: 49/Downstream/21008
Nearby gene
LINC01451(+588) ;
Upstream sequence
GGCCACTCATGTGGAGTCCAGGGGACCCAGGGAGCTCCAGGAGGCCTCTGGAACCCTCCAGAACCTTCCAGAACTTCACACTTGAATTTTGTTCTGTCCC
Downstream sequence
AGGCAGGTTCTCCAGCCTCAGGTCCAATGGCCAACTCATGCCCAGGGCAGGCCCAGTGTGGGGCTTGGGCGCCGAGGGAGGGACCGCACACCTTGAGTTC
Reference
Bodelon, C., et al. Chromosomal copy number alterations and HPV integration in cervical precancer and invasive cancer. Carcinogenesis.2016, 37(2): 188-196.
Curate