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VISDB
Viral Integration Site DataBase
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TVIS20000058
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20000058
Fusion event
HPV-ZEB1 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26735580
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.4
Region type
E1
Start
1161
Integrated sequence
ATTTGAATTATCACAGATGGTACAATGGGCCTACGATAATGACATAGTAGACGATAGTGAAATTGCATATAAATATGCACAATTGGCAGACACTAATAGT| |AATGCAAGTGCCTTTCTAAAAAGTAATTCACAGGCAAAAATTGTAAAGGATTGTGCAACAATGTGTAGACATTATAAACGAGCAGAAAAAAAACAAATGA
Host Sequence
Chromosome
chr10
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
31689429/31400500 (Hg38)
End
31689429/31400500 (Hg38)
Location type
Intronic
Target gene
ZEB1
miRNAs that regulate target gene
hsa-mir-141-3p
;
hsa-mir-429
;
hsa-mir-200c-3p
;
hsa-mir-205-5p
;
hsa-mir-200a-3p
;
hsa-mir-200b-3p
;
hsa-mir-150-5p
;
hsa-mir-130b-3p
;
hsa-mir-335-5p
;
hsa-mir-101-3p
;
hsa-mir-23b-3p
;
hsa-mir-591
;
hsa-mir-629-5p
;
hsa-mir-203a-3p
;
hsa-mir-494-3p
;
hsa-mir-539-5p
;
hsa-mir-655-3p
;
hsa-mir-1236-3p
;
hsa-mir-183-5p
;
hsa-mir-96-5p
;
hsa-mir-142-5p
;
hsa-mir-574-5p
;
hsa-mir-4455
;
hsa-mir-5010-3p
;
hsa-mir-2113
;
hsa-mir-147a
;
hsa-mir-6818-5p
;
hsa-mir-6867-5p
;
hsa-mir-133a-3p
;
hsa-mir-144-3p
;
hsa-mir-590-3p
;
hsa-mir-409-3p
;
hsa-mir-33b-5p
;
hsa-mir-484
;
hsa-mir-652-3p
;
hsa-mir-10b-5p
;
hsa-mir-223-3p
;
hsa-mir-455-3p
;
hsa-mir-19a-5p
;
hsa-mir-19b-1-5p
;
hsa-mir-19b-2-5p
;
hsa-mir-2052
;
hsa-mir-3149
Nearest miRNA
hsa-mir-1265/Upstream/1031835; hsa-mir-107/Downstream/3679098;
Nearest TSS
ENST00000439456/Upstream/18777;
ENST00000420945/Downstream/204100;
Nearest CpG islands
None/Target,
chr10-CpG: 68/Upstream/79335
,
chr10-CpG: 60/Downstream/202761
Upstream sequence
GTAATATTGTCCATTACAATCCAGAAATGGCACATTCTCGAACCTCCCACCGTTGGTCAAGAGGGCTTTGCAAGCGGGCACAGAAGCAAGTGAGGTTTGG
Downstream sequence
CATGCGGATGACAGGGAACGTGACATCTGTAAAATCCGTAGGCACTGTTGAAACACCTGAAATCAACAAAAGACTCTCTTGGCTTTCACAGTTATTTTTA
Reference
Liu, Y., et al. Comprehensive mapping of the human papillomavirus (HPV) DNA integration sites in cervical carcinomas by HPV capture technology. Oncotarget,2016, 7(5): 5852-5864.
Sample Information
×
Sample name
T25
Sample type
Tumor
Gender
Female
CpG Island Information
×
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