VISDB Viral Integration Site DataBase

VIS ID

TVIS20000060

Fusion event

HPV-BCAP29 integration

Validated

Yes

Detection method

PCR and Sanger sequencing

Data source

Curated

Sample type

Disease

Cervical carcinoma (CC)

Quality evaluation

Normal

Reported year

2016

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Region type

E1

Start

958

Integrated sequence

AGAGAAACAATTGAAAAATTGCTGTCTAAACTATTATGTGTGTCTCCAATGTGTATGATGATAGAGCCTCCAAAATTGCGTAGTACAGCAGCAGCATTAT| |ATTGGTATAAAACAGGTATATCAAATATTAGTGAAGTGTATGGAGACACGCCAGAATGGATACAAAGACAAACAGTATTACAACATAGTTTTAATGATTG

Chromosome

chr7

Cytoband

q22.3

Reference genome

Start

End

107223556/107583111 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-1-3p ; hsa-mir-23a-3p

Nearest miRNA

hsa-mir-10525/Upstream/5111580; hsa-mir-10399/Downstream/7070234;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/2934, chr7-CpG: 110/Downstream/77649

Upstream sequence

AAAGAGTCAGAGATAACATAATTTAAAAGATATATGAAGATGAGAAAGAGATACCAAATGACATTTAATTGAGAGATGAGAACACACCAGATGTAACCAT

Downstream sequence

TCATTTAAATTGCCCTTGTACAAAGTTTGTTACCTTTCCTATTGCGTGATGGATTATTTTGCCACTTTGCCATTTATAACCCATGCTTTCTTACCACTGT