Basic Information
VIS ID
TVIS20000065
Fusion event
HPV-chrX:q25 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Tumor
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26735580
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.4
Region type
LCR
Start
38
Integrated sequence
ATGGCTGATCCTGCAGGTACCAATGGGGAAGAGGGTAC| |GGGATGTAATGGATGGTTTTATGTAGAGGCTGTAGTGGAAAAAAAAACAGGGGATGCTATATCAGATGACGAGAACGAAAATGACAGTGATACAGGTGAA
Host Sequence
Chromosome
chrX
Cytoband
q25
Reference genome
GRCh37/hg19
Start
126566946/127432965 (Hg38)
End
126566946/127432965 (Hg38)
Nearest miRNA
hsa-let-7f-2/Upstream/6061912; hsa-mir-105-1/Downstream/6736413;
Nearest TSS
ENST00000429181/Upstream/613201; ENST00000486673/Downstream/229565;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/851627, chrX-CpG: 50/Downstream/2089909
Upstream sequence
gtctggggaggtcttgctggacctgcctagaaagtaaatgagttcctcaggagggtaaaggtgagggctgttaaaggaagttcggaggagcagggagaca
Downstream sequence
tccttcactttccttgttagctgtattcctaggtattttattctctttatagcaatagtgaatggaagttcattcatgatttggctctctgcttgcctgt
Reference
Liu, Y., et al. Comprehensive mapping of the human papillomavirus (HPV) DNA integration sites in cervical carcinomas by HPV capture technology. Oncotarget,2016, 7(5): 5852-5864.
Curate