hsa-mir-6791-5p _CESC.png
hsa-mir-7973 _CESC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS20000101
Fusion event
HPV-chr20:p12.1 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Region type
LCR
Start
7708
Integrated sequence
TGGAGATACACCTACATTGCATGAATATATGTTAGATTTGCAACCAGAGACAACTGATCTCTACTGTTATGAGCAATTAAATGACAGCTCAGAGGAGGAG| |GATGAAATAGATGGTCCAGCTGGACAAGCAGAACCGGACAGAGCCCATTACAATATTGTAACCTTTTGTTGCAAGTGTGACTCTACGCTTCGGTTGTGCG
Host Sequence
Chromosome
chr20
Cytoband
p12.1
Reference genome
End
14875592/14894946 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-103a-2/Upstream/4245251; hsa-mir-1-1/Downstream/3575669;
Upstream sequence
TCATTTTCTATGCTCATTCTGTCTGATCCTGCCTTCTTATATACAAGCCTCATTCAGTAATGGGAGGATAGTAATAGAAAACAGAGGGAACAGTGCTAAT
Downstream sequence
GGGAGACTAGAGGGTGGCAAGAGTTTTGATAAAATTCAGTTCAATAAACTTGTGAATTTAAGAGCATAGAGATTCTATTAACGAGAATGAATAGAAGAAG
Reference
Liu, Y., et al. Comprehensive mapping of the human papillomavirus (HPV) DNA integration sites in cervical carcinomas by HPV capture technology. Oncotarget,2016, 7(5): 5852-5864.
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