Basic Information
VIS ID
TVIS20000109
Fusion event
HPV-chr6:q16.1 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
Region type
E1
Start
2059
Integrated sequence
TACAGACCTACGTGACCATATAGACTATTGGAAACACATGCGCCTAGAATGTGCTATTTATTACAAGGCCAGAGAAATGGGATTTAAACATATTAACCAC| |CAGGTGGTGCCAACACTGGCTGTATCAAAGAATAAAGCATTACAAGCAATTGAACTGCAACTAACGTTAGAAACAATATATAACTCACAATATAGTAATG
Host Sequence
Chromosome
chr6
Cytoband
q16.1
Reference genome
End
94561088/93851370 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/2329633; hsa-mir-1202/Downstream/4173161;
Upstream sequence
aataaggcatgcagacaagattagagaaaaataatgaaaaggaatgaacaaaacctccgagaaatatgggactatgtaaaaagatcaaacctacgattga
Downstream sequence
attcttttttcatcacatccacattaccatctattttttttgactttttaataatggccattctggctggggtaaagtgttatttcgttgaagttttaga
Reference
Liu, Y., et al. Comprehensive mapping of the human papillomavirus (HPV) DNA integration sites in cervical carcinomas by HPV capture technology. Oncotarget,2016, 7(5): 5852-5864.
Curate