Fusion event
HPV-chr6:q16.1 integration
Detection method
PCR and Sanger sequencing
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Integrated sequence
TACAGACCTACGTGACCATATAGACTATTGGAAACACATGCGCCTAGAATGTGCTATTTATTACAAGGCCAGAGAAATGGGATTTAAACATATTAACCAC| |CAGGTGGTGCCAACACTGGCTGTATCAAAGAATAAAGCATTACAAGCAATTGAACTGCAACTAACGTTAGAAACAATATATAACTCACAATATAGTAATG
End
94561088/93851370 (Hg38)
Nearest miRNA
hsa-mir-10398/Upstream/2329633; hsa-mir-1202/Downstream/4173161;
Upstream sequence
aataaggcatgcagacaagattagagaaaaataatgaaaaggaatgaacaaaacctccgagaaatatgggactatgtaaaaagatcaaacctacgattga
Downstream sequence
attcttttttcatcacatccacattaccatctattttttttgactttttaataatggccattctggctggggtaaagtgttatttcgttgaagttttaga
Liu, Y., et al. Comprehensive mapping of the human papillomavirus (HPV) DNA integration sites in cervical carcinomas by HPV capture technology. Oncotarget,2016, 7(5): 5852-5864.