Basic Information
VIS ID
TVIS20000134
Fusion event
HPV-CCAT1 integration
Validated
Yes
Detection method
PCR and Sanger sequencing
Data source
Curated
Sample type
Cell line
Disease
Cervical carcinoma (CC)
Quality evaluation
Normal
Reported year
2016
PubMed ID
26735580
Virus Sequence
Virus name
HPV
Subtype
HPV18
Reference genome
NC_001526.2
Gene
L1
Start
5736
Integrated sequence
TGATGCAGGTGACTTTTATTTACATCCTAGTTATTACATGTTA CGAAAACGACGTAAACGTTTACCATATTTTTTTTCAGATGTCTCTTTGGCTGCCTA| |GTGAGGCCACTGTC TACTTGCCTCCTGTCCCAGTATCTAAGGTTGTAAGCACGGATGAATATGTTGCACGCACAAACATATATT ATCATGCAGGAACA
Host Sequence
Chromosome
chr8
Cytoband
q24.21
Reference genome
GRCh37/hg19
Start
128230632/127218387 (Hg38)
End
128230632/127218387 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA8C ; FRA8E
Target gene
CCAT1
Nearest miRNA
hsa-mir-12123/Upstream/2396329; hsa-mir-10400/Downstream/577575;
Nearest TSS
ENST00000518652/Upstream/138513; ENST00000642795/Downstream/26250;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/659862, chr8-CpG: 29/Downstream/97255
Upstream sequence
TATTTAGAAAGTGAGTTGGAAGGAAGTAGCTTGTATTCCAAAATGAATTGCAAAATGCATACAAAtggataaggccaaatatattgacacaggtacatct
Downstream sequence
TAACCAGACAAAAACTTTAATAATATTTGTCAAATGCCAAATCGGAGTCCAAAGCCATTGTCCATTTTAAGAAAatcatctgacttaacatcactactgc
Reference
Liu, Y., et al. Comprehensive mapping of the human papillomavirus (HPV) DNA integration sites in cervical carcinomas by HPV capture technology. Oncotarget,2016, 7(5): 5852-5864.
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