Basic Information
VIS ID
TVIS20000146
Fusion event
HPV-chr1:p11.2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV18
Reference genome
AY262282.1
Host Sequence
Chromosome
chr1
Cytoband
p11.2
Reference genome
GRCh37/hg19
Start
121484307/121742509 (Hg38)
End
121484307/121742509 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/4647781; hsa-mir-1182/Downstream/24108078;
Nearest TSS
ENST00000473358/Upstream/161985; ENST00000443018/Downstream/21758003;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/222782, chr1-CpG: 312/Downstream/3343000
Upstream sequence
CAGCACCTGCCTCTGCCTAGCAAGGCGTCCGAATTCTCAAACACACCAGAGACTCAAAGATGGAGAGAACCCCCTCTGGTTCCTTTCTCACTGAGGCCCT
Downstream sequence
cctCAGTTTAAAGGAGATACATTCAAACAAGGCCTAGAGTGTGAGAGTCTCCTATTAAAAATTTCCAGCTCTCATTACCttattttctttcttttttttt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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