Basic Information
VIS ID
TVIS20000162
Fusion event
HPV-chr1:p13.2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;AY262282.1
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
End
113449880/112907258 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/25129; hsa-mir-1182/Downstream/3652766;
Nearby gene
SLC16A1(+4589) ;
Upstream sequence
aggcaggagaatcgcttgaacccaggaggcggaggttgcggtgagccgagatcaaaccattgcactccagcctgggcaacaagagtgaaactccgtcgca
Downstream sequence
aaaaaaaaaaaaagaaaagaaaaaagaaaagaGAATCTCTGATTCTGGGACTCATTCCCTGGTGACAGGACCAACGTCCCCCTTGACAGCCATCACCAAG
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
Curate