Basic Information
VIS ID
TVIS20000227
Fusion event
HPV-chr1:q41 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;AY262282.1;HQ537751.1
Host Sequence
Chromosome
chr1
Cytoband
q41
Reference genome
GRCh37/hg19
Start
220076243/219902901 (Hg38)
End
220076243/219902901 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/7825216; hsa-mir-1182/Downstream/214952;
Nearest TSS
ENST00000473358/Upstream/289756; ENST00000490891/Downstream/16129;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/289681, chr1-CpG: 116/Downstream/24889
Nearby gene
SLC30A10(+7494) ;
Upstream sequence
CTCATTCCCTGGTGACAGGACCAACGTCCCCCTTGACAGCCATCACCAAGACATATCAGGACCTCTGTCCTCCCGTGCTTAGACAGGGACTTAAGTTGCA
Downstream sequence
TCTCTCCCCTCTCCCATTCCCCTTCCCTCAGGGCCCCCCACCCCTGTATGTTACATCttttttttttttttcctttttctttttCTCACCAGTTAATAGA
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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