VISDB Viral Integration Site DataBase

VIS ID

TVIS20000287

Fusion event

HPV-MAPKAPK5 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Reference genome

NC_001526.2;HQ537687.1

Chromosome

chr12

Cytoband

q24.12

Reference genome

Start

End

112299649/111861845 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-615-3p ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-769-5p ; hsa-mir-4786-5p ; hsa-mir-3190-5p ; hsa-mir-6849-3p ; hsa-mir-1322 ; hsa-mir-1272 ; hsa-mir-4517 ; hsa-mir-6771-3p ; hsa-mir-4684-5p ; hsa-mir-593-3p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-6732-3p ; hsa-mir-6818-3p ; hsa-mir-6895-3p ; hsa-mir-4439 ; hsa-mir-3136-5p ; hsa-mir-4452 ; hsa-mir-573 ; hsa-mir-3616-5p ; hsa-mir-3118 ; hsa-mir-134-5p ; hsa-mir-6857-3p ; hsa-mir-6855-3p ; hsa-mir-4513 ; hsa-mir-4795-5p ; hsa-mir-494-3p ; hsa-mir-4635 ; hsa-mir-602 ; hsa-mir-377-3p ; hsa-mir-4789-5p ; hsa-mir-4789-3p ; hsa-mir-8485 ; hsa-mir-3977 ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-7977 ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-5693 ; hsa-mir-383-3p ; hsa-mir-3681-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-3922-5p ; hsa-mir-6814-5p ; hsa-mir-653-3p ; hsa-mir-25-5p ; hsa-mir-658 ; hsa-mir-6087 ; hsa-mir-4459 ; hsa-mir-7846-3p ; hsa-mir-665 ; hsa-mir-654-5p ; hsa-mir-541-3p ; hsa-mir-4683 ; hsa-mir-7160-5p ; hsa-mir-7854-3p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-7162-3p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6888-5p ; hsa-mir-5089-5p ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-4509 ; hsa-mir-186-3p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-3910 ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-4484 ; hsa-mir-6768-3p ; hsa-mir-548an ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-2467-3p ; hsa-mir-335-5p ; hsa-mir-3612 ; hsa-mir-377-5p ; hsa-mir-4252 ; hsa-mir-4257 ; hsa-mir-455-3p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6511a-5p ; hsa-mir-6516-5p ; hsa-mir-6807-5p ; hsa-mir-106a-3p ; hsa-mir-122-5p ; hsa-mir-130a-3p ; hsa-mir-130b-3p ; hsa-mir-215-3p ; hsa-mir-301a-3p ; hsa-mir-301b-3p ; hsa-mir-3135b ; hsa-mir-3194-3p ; hsa-mir-3652 ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-4430 ; hsa-mir-4466 ; hsa-mir-454-3p ; hsa-mir-500b-3p ; hsa-mir-504-3p ; hsa-mir-5691 ; hsa-mir-675-5p ; hsa-mir-6773-3p ; hsa-mir-6805-3p ; hsa-mir-6879-3p ; hsa-mir-1228-5p ; hsa-mir-1273h-5p ; hsa-mir-149-3p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-4728-5p ; hsa-mir-548a-3p ; hsa-mir-548ae-3p ; hsa-mir-548ah-3p ; hsa-mir-548aj-3p ; hsa-mir-548am-3p ; hsa-mir-548aq-3p ; hsa-mir-548ar-3p ; hsa-mir-548av-3p ; hsa-mir-548az-3p ; hsa-mir-548e-3p ; hsa-mir-548f-3p ; hsa-mir-548j-3p ; hsa-mir-548x-3p ; hsa-mir-6089 ; hsa-mir-6134 ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-7106-5p ; hsa-mir-653-5p

Nearest miRNA

hsa-let-7i/Upstream/61940; hsa-mir-1178/Downstream/175754;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/18935, chr12-CpG: 94/Downstream/151256

Upstream sequence

ttttactaagtgatttttagcagatatgggctttgaattttgtctagcacctttcatcctatctggagatattcttatgagttttctccttagatatatt

Downstream sequence

aacatagtaaaatattttaataaaatatctaatactgtaccatcctagcattcttcaattgtttatattaaaatatttttgtttgcccgtgcaattatat