Basic Information
VIS ID
TVIS20000295
Fusion event
HPV-LOC102724214 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537687.1
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
GRCh37/hg19
Start
36449053/36156852 (Hg38)
End
36449053/36156852 (Hg38)
Location type
Intronic
Target gene
LOC102724214
Nearest miRNA
hsa-mir-1233-1/Upstream/229929; hsa-mir-10393/Downstream/815969;
Nearest TSS
ENST00000557528/Upstream/110770; ENST00000561236/Downstream/95405;
Nearest CpG islands
None/Target, chr15-CpG: 55/Upstream/610538, chr15-CpG: 35/Downstream/422406
Upstream sequence
aggtgaaagattgccagaagctggggaatgcaagcagcctctaggaactgcagagtgaggaaatgaattccctctatcccccagaacctccaaagggaac
Downstream sequence
CAGTAATTGATAGAAAGATGTGGCTCCTATCCTCAGAAGCTCATGCTCTAGAGAAACAAGTACAATGTGCAGTCCTTGATGGACCCTCCCTGACATTCTT
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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