Basic Information
VIS ID
TVIS20000308
Fusion event
HPV-LOC105371308 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537687.1
Host Sequence
Chromosome
chr16
Cytoband
q21
Reference genome
GRCh37/hg19
Start
63644834/63610930 (Hg38)
End
63644834/63610930 (Hg38)
Location type
Intronic
Target gene
LOC105371308
Nearest miRNA
hsa-mir-1225/Upstream/5838578; hsa-mir-11401/Downstream/3591391;
Nearest TSS
ENST00000527434/Upstream/242086; ENST00000563061/Downstream/7114;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/1574200, chr16-CpG: 19/Downstream/1339848
Upstream sequence
GTTTCAAAGTAGTTAAAAAGGTGAATGCTTAATCTCTGAAAGCATAAGTCTATGTAGGGAATTTTGtatattttataatttatcattttaaataaaaaga
Downstream sequence
taaataaggaatcctttccctgttgtttgttgttgtcagatttgtcaaaaataagatggttgtaggggtgcagtcttatttctgggttctctattctgtt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
Curate