Basic Information
VIS ID
TVIS20000339
Fusion event
HPV-VSTM2L integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537687.1
Host Sequence
Chromosome
chr20
Cytoband
q11.23
Reference genome
End
36532334/37903932 (Hg38)
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-103a-2/Upstream/2449835; hsa-mir-1-1/Downstream/612631;
Upstream sequence
tatttagtatatttcaatcagtttctgccagtactcattgctctgctcaaaatttgccagatttgacatcaaacttgttcttacgtgctgttggcatgtt
Downstream sequence
ACACACTGGTGCGCGCGCGCGcacacacacacaggcacacacatacacacacaTGAACACAATTTGCTCACCCACTCCTCTCTGCCCATCTGCCTTTACT
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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