VISDB Viral Integration Site DataBase

VIS ID

TVIS20000342

Fusion event

HPV-CHAF1B integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Reference genome

NC_001526.2;HQ537687.1

Chromosome

chr21

Cytoband

q22.12

Reference genome

Start

End

37772712/36400414 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-155-5p ; hsa-mir-1-3p ; hsa-mir-484 ; hsa-mir-5096 ; hsa-mir-6855-5p ; hsa-mir-3170 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-23a-5p ; hsa-mir-23b-5p ; hsa-mir-193b-5p ; hsa-mir-1273f ; hsa-mir-4716-5p ; hsa-mir-4781-3p ; hsa-mir-6890-5p ; hsa-mir-574-5p ; hsa-mir-147a ; hsa-mir-6759-5p ; hsa-mir-6741-5p ; hsa-mir-190a-3p ; hsa-mir-6867-5p ; hsa-mir-644a ; hsa-mir-3911 ; hsa-mir-6793-5p ; hsa-mir-6748-5p ; hsa-mir-511-3p ; hsa-mir-487a-3p ; hsa-mir-154-3p ; hsa-mir-5011-5p ; hsa-mir-6818-5p ; hsa-mir-3924 ; hsa-mir-223-5p ; hsa-mir-581 ; hsa-mir-1-5p ; hsa-mir-1277-5p ; hsa-mir-6832-5p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-4696 ; hsa-mir-4725-5p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-3187-5p ; hsa-mir-5189-5p ; hsa-mir-1285-3p ; hsa-mir-766-3p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-939-3p ; hsa-mir-339-5p ; hsa-mir-6849-3p ; hsa-mir-6501-3p ; hsa-mir-451b ; hsa-mir-508-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-3667-5p ; hsa-mir-7703 ; hsa-mir-4252 ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-4789-5p ; hsa-mir-3941 ; hsa-mir-4789-3p ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485

Nearest miRNA

hsa-let-7c/Upstream/679606; hsa-mir-3197/Downstream/3046596;

Nearest TSS

Nearest CpG islands

None/Target, chr21-CpG: 261/Upstream/14599, chr21-CpG: 89/Downstream/292465

Upstream sequence

acaaaaaatataaaattagccgggtgcatgcatgtgatcccagctattcaggaggctgaggcaggagaattgcttgaacctgggaggtggaggttgcagt

Downstream sequence

gagctgaaatcacaccattgcactccagcctgggtgacaagagcgaaactcagtctcaaaataaataaataaataaaaataaaataaaaataaaaataTG