Basic Information
VIS ID
TVIS20000343
Fusion event
HPV-FAM230F integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537687.1
Host Sequence
Chromosome
chr22
Cytoband
q11.21
Reference genome
End
18874404/18886891 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-3198-1/Upstream/905930; hsa-let-7a-3/Downstream/1076862;
Upstream sequence
TGGTAAAATACACCTCCTCCATCCCCAAGGAAATATTATCTAACATCTATAATGTAGTGGATAATTTTCCCATAGCTGATATCAACTGAAAAATAAAGGA
Downstream sequence
TCCAAGAAAACAACATTTACATCTTAGGCAAAGACAGGCTACTTTACCTTGGTAGTAGAGTAGGGCTGCCTTTTCACACGCCTTTGGGAAGGCTTCTTCG
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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