Basic Information
VIS ID
TVIS20000345
Fusion event
HPV-LOC105376921 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537687.1
Host Sequence
Chromosome
chr3
Cytoband
p26.3
Reference genome
End
107669/65986 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Downstream/5184191;
Nearest CpG islands
None/Target, None/Upstream, chr3-CpG: 148/Downstream/130722
Upstream sequence
aggccaaatgaagcaaacagttatgtgggtgcaagccaaagaatgcttggggccaccagaagctagaagaggcaaggaagttttctcccctagagcctgt
Downstream sequence
gattcaaaacatagatctgtctgagtccaaaagccttcatcttGGCAGTGGAATATAGTCAATGGCTAAGAGACAAGAAACAATGGAGAGCTTAGAACTA
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
Curate