Basic Information
VIS ID
TVIS20000364
Fusion event
HPV-NEK11 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537687.1
Host Sequence
Chromosome
chr3
Cytoband
q22.1
Reference genome
End
130761119/131042275 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/1770032; hsa-mir-1224/Downstream/943580;
Upstream sequence
attgccctcattgagaaccactgCCCTAATAGAAGGATTTAGAGAACTGGAGGTTCAGGGAGTAGCAAGAAGACCCCCAGCACAAGGTGTGGCTCAGAGC
Downstream sequence
tggaaagggggctgaagccagggagccaagaggtcttgctcagcggatcccattcccatggaacccagcaagctaagatccactggcttgaaattctcac
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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