Basic Information
VIS ID
TVIS20000402
Fusion event
HPV-NOS3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537687.1
Host Sequence
Chromosome
chr7
Cytoband
q36.1
Reference genome
GRCh37/hg19
Start
150703334/151006246 (Hg38)
End
150703334/151006246 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA7I
Target gene
NOS3
miRNAs that regulate target gene
hsa-mir-155-5p ; hsa-mir-335-5p ; hsa-mir-24-3p ; hsa-mir-200c-3p ; hsa-mir-543 ; hsa-mir-335-3p
Nearest miRNA
hsa-mir-10399/Upstream/3628125; hsa-mir-153-2/Downstream/232175;
Nearest TSS
ENST00000635602/Upstream/4379; ENST00000473057/Downstream/2628;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/26749, chr7-CpG: 26/Downstream/2425
Upstream sequence
caatgagccaagattgtgccactgcacttcagcctaggcaacagagcaagacttcatctcaaaaaataaaaaataaaagtcaaggattcctgctatcaac
Downstream sequence
actttacacatttctgtaatgtcatttttcaaaaacatcagatcgcttttgaaattttcaaaacaaataaAAATTAAGTTACAAATCAATAATAATGAGG
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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