Basic Information
VIS ID
TVIS20000440
Fusion event
HPV-LINC01562 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr1
Cytoband
p32.3
Reference genome
GRCh37/hg19
Start
51693843/51228171 (Hg38)
End
51693843/51228171 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1B
Target gene
LINC01562
Nearest miRNA
hsa-mir-12136/Upstream/168068; hsa-mir-101-1/Downstream/608173;
Nearest TSS
ENST00000473358/Upstream/115711; ENST00000486691/Downstream/6925;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/249807, chr1-CpG: 87/Downstream/7924
Upstream sequence
gccatagataaccagaacaCAGCCTGAGGAACATGGCTATGGACTCTGCTTCCTGACGGAAGGCAAAGGGTACTGGGATAACATACAGATTGATCCTTAC
Downstream sequence
TGCAGCAATACATCCTCTTTTCCACTTACTTATTTTATACTGCTCTTCCTTTTCCTATCCTGATTCCATGGCCAACAATAAAAGTTTATTGCATTCACTG
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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