Basic Information
VIS ID
TVIS20000454
Fusion event
HPV-LOC100288510 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr5
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
56614165/57318338 (Hg38)
End
56614165/57318338 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA5H
Target gene
LOC100288510
Nearest miRNA
hsa-mir-10397/Upstream/1809412; hsa-mir-103a-1/Downstream/1211705;
Nearest TSS
ENST00000502646/Upstream/69476; ENST00000506106/Downstream/76722;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/143644, chr5-CpG: 157/Downstream/1141169
Upstream sequence
TGAACATGAATGCATGGATGGATGCTATTTTTCATGCTACTACTCTCTTCAGTTGGTcagcacgatattgtggaaggagccctagtctcagaatcagaag
Downstream sequence
ACCAGCAAAAGATGGCCTGTAGCAATGAGATTGTGCATTCCATTGCTTTTCTGCTTGAAAAGCAGCAAAGATGAAGGAGGAAAAGTGGTTGGTGCGTATA
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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