Basic Information
VIS ID
TVIS20000563
Fusion event
HPV-SMURF2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr17
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
62647207/64651089 (Hg38)
End
62647207/64651089 (Hg38)
Location type
Intronic
Target gene
SMURF2
miRNAs that regulate target gene
hsa-mir-122-5p ; hsa-mir-16-5p ; hsa-mir-630 ; hsa-mir-511-5p ; hsa-mir-203a-3p ; hsa-mir-4670-3p ; hsa-mir-93-3p ; hsa-mir-382-5p ; hsa-mir-431-5p ; hsa-mir-526b-5p ; hsa-mir-4635 ; hsa-mir-665 ; hsa-mir-4495 ; hsa-mir-3667-5p ; hsa-mir-6807-5p ; hsa-mir-6872-3p ; hsa-mir-378a-5p ; hsa-mir-4454 ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-1224-3p ; hsa-mir-186-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p
Nearest miRNA
hsa-mir-10226/Upstream/149776; hsa-mir-1250/Downstream/129670;
Nearest TSS
ENST00000595228/Upstream/52644; ENST00000577938/Downstream/9773;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/143641, chr17-CpG: 112/Downstream/10202
Upstream sequence
aaaataaataaACAAACACAAGAGATTAATTCATGGGCCCGCTCAGCAACCTATTTAAATCCTTATCAAAGTGGagcatttgggaggctgaggcgggcgg
Downstream sequence
gggagggtgaagcaggagaatcacttgaacccaggaggcggaggttgcagtgagctgagatcgcgccattgcactccagcctgggcgacatagcaaggct
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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