Basic Information
VIS ID
TVIS20000807
Fusion event
HPV-LOC105372191 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr18
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
71426342/73759107 (Hg38)
End
71426342/73759107 (Hg38)
Location type
Intronic
Target gene
LOC105372191
Nearest miRNA
hsa-mir-1-2/Upstream/905725;
Nearest TSS
ENST00000575820/Upstream/43617; ENST00000581467/Downstream/275054;
Nearest CpG islands
None/Target, chr18-CpG: 67/Upstream/889471, chr18-CpG: 97/Downstream/388213
Upstream sequence
GGACTTTCAAACTTTTGTTAAACCTTTTGTTTAACCTTGTGGAGAACTTTCCTTTGGAAAATTAAATGTACTTTCAACAAGCATACTGCAAGTTAAAAGT
Downstream sequence
caggtatgagccaccatgccaggccTAAACTGTTTTTGAAGCATTAGCAAAAGTATCTCCTCCTGGACTGTTCAGAAAGGGACCCCTTGGGTATCTGCAC
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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