Basic Information
VIS ID
TVIS20000819
Fusion event
HPV-CCNJL integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr5
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
159760631/160333624 (Hg38)
End
159760631/160333624 (Hg38)
Location type
Intronic
Target gene
CCNJL
Nearest miRNA
hsa-mir-10397/Upstream/5504084; hsa-mir-103a-1/Downstream/140778;
Nearest TSS
ENST00000502646/Upstream/20696; ENST00000524244/Downstream/6026;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/20718, chr5-CpG: 38/Downstream/36757
Upstream sequence
aaagagaatagtaaaatgaaactgtgagtaaccatcactcgacttccacaataatcaactcaggatcatcttgtttccttgctacccaccctgtttctgt
Downstream sequence
CTAGCTAAgagaacaagcttccactataatccccttaggtggagttgttttctgtccctctccccttgtaccaagaggaccaagcggaaggtggtgaccc
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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