VISDB Viral Integration Site DataBase

VIS ID

TVIS20000870

Fusion event

HPV-UBE2Z integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr17

Cytoband

q21.32

Reference genome

Start

End

46998575/48921213 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-340-5p ; hsa-mir-32-5p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-324-3p ; hsa-mir-183-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-196a-5p ; hsa-mir-16-5p ; hsa-mir-25-3p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-570-3p ; hsa-mir-651-3p ; hsa-mir-3613-3p ; hsa-mir-205-5p ; hsa-mir-153-5p ; hsa-mir-6835-3p ; hsa-mir-495-3p ; hsa-mir-5688 ; hsa-mir-4423-3p ; hsa-mir-500a-3p ; hsa-mir-767-5p ; hsa-mir-137 ; hsa-mir-4762-3p ; hsa-mir-6751-3p ; hsa-mir-4303 ; hsa-mir-1199-5p ; hsa-mir-4422 ; hsa-mir-2113 ; hsa-mir-557 ; hsa-mir-507 ; hsa-mir-550b-2-5p ; hsa-mir-3121-5p ; hsa-mir-3943 ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-5695 ; hsa-mir-671-5p ; hsa-mir-4263 ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-151b ; hsa-mir-151a-5p ; hsa-mir-611 ; hsa-mir-3131 ; hsa-mir-4254 ; hsa-mir-4308 ; hsa-mir-5584-5p ; hsa-mir-6779-3p ; hsa-mir-6873-5p ; hsa-mir-1238-5p ; hsa-mir-1275 ; hsa-mir-1296-3p ; hsa-mir-3202 ; hsa-mir-4271 ; hsa-mir-4447 ; hsa-mir-4472 ; hsa-mir-4481 ; hsa-mir-4525 ; hsa-mir-4658 ; hsa-mir-4665-5p ; hsa-mir-4723-5p ; hsa-mir-4725-3p ; hsa-mir-4745-5p ; hsa-mir-4747-5p ; hsa-mir-4758-5p ; hsa-mir-5010-5p ; hsa-mir-5196-5p ; hsa-mir-526b-5p ; hsa-mir-5698 ; hsa-mir-625-5p ; hsa-mir-6780b-5p ; hsa-mir-6790-5p ; hsa-mir-6870-5p ; hsa-mir-7111-5p

Nearest miRNA

hsa-mir-10226/Upstream/196738; hsa-mir-1250/Downstream/367133;

Nearest TSS

Nearest CpG islands

None/Target, chr17-CpG: 26/Upstream/12038, chr17-CpG: 39/Downstream/23487

Upstream sequence

GTAGCATATTGCTAAAAGTTGATTCAATGAGGGTGATGTGGTTATTTTCTTTGTTCTCTTCTCAATTTGTTTTCTGAAAGTAGAGAACCACACTTTTTTT

Downstream sequence

ATCAGAGTTGCAGTCTGTGACATGATGGAAGGAAAGTGTCCCTGTCCTGAACCCCTACGGTATGTGTCAAGCGGGCTTGCTTGGTATTCCTTTCGGGCAT