VISDB Viral Integration Site DataBase

VIS ID

TVIS20000903

Fusion event

HPV-NCKAP1 integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr2

Cytoband

q32.1

Reference genome

Start

End

183834443/182969715 (Hg38)

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-155-5p ; hsa-mir-142-3p ; hsa-mir-30a-5p ; hsa-mir-18b-5p ; hsa-mir-132-3p ; hsa-mir-4459 ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-1273e ; hsa-mir-582-5p ; hsa-mir-101-3p ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6878-5p ; hsa-mir-25-5p ; hsa-mir-658 ; hsa-mir-655-5p ; hsa-mir-6087 ; hsa-mir-4537 ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-219b-3p ; hsa-mir-1247-3p ; hsa-mir-6871-5p ; hsa-mir-302f ; hsa-mir-6828-5p ; hsa-mir-922 ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-15a-5p ; hsa-mir-548e-5p ; hsa-mir-6818-3p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-629-3p ; hsa-mir-498 ; hsa-mir-6867-3p ; hsa-mir-4713-5p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-23b-5p ; hsa-mir-23a-5p ; hsa-mir-4284 ; hsa-mir-6829-3p ; hsa-mir-6791-3p ; hsa-mir-1304-3p ; hsa-mir-1281 ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-1200 ; hsa-mir-3653-5p ; hsa-mir-544b ; hsa-mir-4324 ; hsa-mir-660-3p ; hsa-mir-7108-3p ; hsa-mir-4258 ; hsa-mir-335-3p ; hsa-mir-1305 ; hsa-mir-576-5p ; hsa-mir-4775 ; hsa-mir-5681b ; hsa-mir-95-5p ; hsa-mir-3163 ; hsa-mir-590-3p ; hsa-mir-3662 ; hsa-mir-4684-5p ; hsa-mir-3675-3p ; hsa-mir-6771-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548c-3p ; hsa-mir-34c-3p ; hsa-mir-1972 ; hsa-mir-383-5p ; hsa-mir-4650-5p ; hsa-mir-4772-5p ; hsa-mir-20a-3p ; hsa-mir-3913-3p ; hsa-mir-4732-3p ; hsa-mir-489-3p ; hsa-mir-544a ; hsa-mir-6719-3p ; hsa-mir-942-5p

Nearest miRNA

hsa-mir-10b/Upstream/1664063; hsa-mir-1244-1/Downstream/1409260;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/102350, chr2-CpG: 98/Downstream/67959

Upstream sequence

TGGCCTGAAGTACCTGCCTACGTTCAAACACAGATTTTCATTTGGGAGTCAGAGTGACATGAAAAAAGTAaatatttgaatcacctaaagaatcttttca

Downstream sequence

taatgtaccttaaagaactagaaaagcaagaataaaccaaatccaaagttagcagaaggagataagtaataaagatcggagcagaaataaagaaaattca