Basic Information
VIS ID
TVIS20000906
Fusion event
HPV-CLSTN2 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Subtype
HPV18
Reference genome
Host Sequence
Chromosome
chr3
Cytoband
q23
Reference genome
End
140014154/140295312 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7g/Upstream/5857406; hsa-mir-1224/Downstream/11270564;
Upstream sequence
CTTTAAGGAAGCAGCCACTTCCTCACTGTACTGGTAGGGCTGCCATTCACATCATATGCCCAGAAGGCACTTAGAGCTCAGTAATCTCATGGCCATGGCC
Downstream sequence
CAGCTTGTATAGTGGGTATTTCAGCCTTTTATCCACCACATAAACTATTTCCCTTGGTTTTAAAATGCACCTTTCAATCTGTTTGTCATAGTTTTTCCTT
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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