VISDB Viral Integration Site DataBase

VIS ID

TVIS20000931

Fusion event

HPV-KDM5A integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr12

Cytoband

p13.33

Reference genome

Start

End

458933/349767 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-130b-5p ; hsa-mir-517-5p ; hsa-mir-5684 ; hsa-mir-136-5p ; hsa-mir-526a ; hsa-mir-523-5p ; hsa-mir-522-5p ; hsa-mir-520c-5p ; hsa-mir-519c-5p ; hsa-mir-519b-5p ; hsa-mir-519a-5p ; hsa-mir-518f-5p ; hsa-mir-518e-5p ; hsa-mir-518d-5p ; hsa-mir-4662a-5p ; hsa-mir-539-5p ; hsa-mir-520g-5p ; hsa-mir-3123 ; hsa-mir-3925-5p ; hsa-mir-4797-5p ; hsa-mir-618 ; hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-4655-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-548n ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-4634 ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-6809-3p ; hsa-mir-7150 ; hsa-mir-4753-3p ; hsa-mir-4778-3p ; hsa-mir-136-3p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-let-7i/Downstream/1310548;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/145602, chr12-CpG: 37/Downstream/39165

Nearest cancer related gene

KDM5A(TSG, No orient, 0)

Upstream sequence

agttttatctctggataccgtactttgttccattggtctttgtatgtgtttttttttgccagtaccatgctgttttgattactcaagctctgtagtagat

Downstream sequence

tttgaaaactggtagtcaggtaatatgatggctccagctttgatctttttgcttaggattgcttcagctatttgggatcttttgtgattccgtatgaatt