VISDB Viral Integration Site DataBase

VIS ID

TVIS20000935

Fusion event

HPV-CPM integration

Validated

No

Detection method

HIVID

Data source

Curated

Sample type

Disease

Not given

Quality evaluation

Normal

Reported year

2015

PubMed ID

Virus name

HPV

Subtype

HPV16

Reference genome

Chromosome

chr12

Cytoband

q15

Reference genome

Start

End

69298300/68904520 (Hg38)

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-26b-5p ; hsa-mir-6825-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-5196-5p ; hsa-mir-4747-5p ; hsa-mir-6797-5p ; hsa-mir-1249-5p ; hsa-mir-3202 ; hsa-mir-9500 ; hsa-mir-3179 ; hsa-mir-2392 ; hsa-mir-6807-5p ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-5002-3p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-6799-5p ; hsa-mir-7977 ; hsa-mir-7106-5p ; hsa-mir-4673 ; hsa-mir-4645-5p ; hsa-mir-4692 ; hsa-mir-4514 ; hsa-mir-383-3p ; hsa-mir-6511a-5p ; hsa-mir-1910-3p ; hsa-mir-498 ; hsa-mir-4279 ; hsa-mir-2355-5p ; hsa-mir-6778-3p ; hsa-mir-1976 ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-4726-3p ; hsa-mir-6764-5p ; hsa-mir-1915-3p ; hsa-mir-6840-3p ; hsa-mir-2909 ; hsa-mir-4668-5p ; hsa-mir-1296-5p ; hsa-mir-1258 ; hsa-mir-3152-3p ; hsa-mir-4694-5p ; hsa-mir-609 ; hsa-mir-4455 ; hsa-mir-6772-5p ; hsa-mir-6729-5p ; hsa-mir-4649-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6827-3p ; hsa-mir-340-3p ; hsa-mir-3613-3p ; hsa-mir-3141 ; hsa-mir-548s ; hsa-mir-3926 ; hsa-mir-661 ; hsa-mir-3116 ; hsa-mir-1254 ; hsa-mir-3190-5p ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-146a-5p ; hsa-mir-1247-3p ; hsa-mir-1273e ; hsa-mir-1827 ; hsa-mir-219b-3p ; hsa-mir-2467-3p ; hsa-mir-302f ; hsa-mir-3612 ; hsa-mir-377-5p ; hsa-mir-3929 ; hsa-mir-4257 ; hsa-mir-4329 ; hsa-mir-4419b ; hsa-mir-4478 ; hsa-mir-4524a-3p ; hsa-mir-4524b-3p ; hsa-mir-4537 ; hsa-mir-455-3p ; hsa-mir-4768-3p ; hsa-mir-485-5p ; hsa-mir-6086 ; hsa-mir-6499-3p ; hsa-mir-650 ; hsa-mir-6516-5p ; hsa-mir-6746-5p ; hsa-mir-6771-5p ; hsa-mir-6884-5p

Nearest miRNA

hsa-let-7i/Upstream/2653363; hsa-mir-1178/Downstream/368637;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/95637, chr12-CpG: 95/Downstream/28386

Upstream sequence

AATCCGGAAGGCTGAGAGTGCGGAGGACTTCCCGATCCTTTTCAGACAAGTGAGCAGTTCTTGCTGTGTCTTTTCGCATCTGTCTTTGGGAATTGTTTGT

Downstream sequence

GGGCTGCCAGATTATTTCTCTTAGCATTATTCTGTGACAGTCAAGAAGACATTTGTAGGAGCTGGATGTATCGTTGTATCGTATTTTGCAACAAACGCGT