Basic Information
VIS ID
TVIS20000961
Fusion event
HPV-LOC101928021 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr17
Cytoband
q24.2
Reference genome
GRCh37/hg19
Start
65253724/67257608 (Hg38)
End
65253724/67257608 (Hg38)
Location type
Intronic
Target gene
LOC101928021
Nearest miRNA
hsa-mir-10226/Upstream/470440; hsa-mir-1250/Downstream/213881;
Nearest TSS
ENST00000595228/Upstream/11619; ENST00000584471/Downstream/84876;
Nearest CpG islands
None/Target, chr17-CpG: 26/Upstream/11226, chr17-CpG: 47/Downstream/108619
Upstream sequence
CTTGAAGTCCCTTCCCATTGGTTTTCTTTTTGCTTAATTTTTGGAATACTCTGGCATCTGTTACATTATAGGAGAGACATCCAGGAGACAGCAAAAACTA
Downstream sequence
TATCCAGTGGCTGTTTCTGGCTTCTCAGTTCACTTTTGAATCCCCTACTTTTCCTTCTCTCTCCTAGTCAGATGTGTTCtgtgtgtgtgtgtgtgtgtgt
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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