Basic Information
VIS ID
TVIS20000997
Fusion event
HPV-LINC02028 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Subtype
HPV16
Reference genome
NC_001526.2
Host Sequence
Chromosome
chr3
Cytoband
q29
Reference genome
GRCh37/hg19
Start
193734627/194016838 (Hg38)
End
193734627/194016838 (Hg38)
Location type
Intronic
Target gene
LINC02028
Nearest miRNA
hsa-let-7g/Upstream/4186829; hsa-mir-3137/Downstream/1117668;
Nearest TSS
ENST00000440867/Upstream/13179; ENST00000615650/Downstream/53265;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/13336, chr3-CpG: 22/Downstream/41464
Upstream sequence
TAATACATAGTAATTGTGGATACTTTACCAATATTCTGTATTTACCACTTCCTATTCCCTAGAAATATTCTTCTCTCACTTTCTACATGAAATTTATAAA
Downstream sequence
ccacaccatgtcttcaggcgctggtgactatttcatgcttacggcacatctcaatacatcccaatatctcatgctaacggccacattcctggtgctcagc
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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