Basic Information
VIS ID
TVIS20001043
Fusion event
HPV-chr1:p34.3 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr1
Cytoband
p34.3
Reference genome
GRCh37/hg19
Start
35660386/35194785 (Hg38)
End
35660386/35194785 (Hg38)
Nearest miRNA
hsa-mir-12136/Upstream/525091; hsa-mir-101-1/Downstream/1966778;
Nearest TSS
ENST00000473358/Upstream/1637; ENST00000441447/Downstream/74182;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/1575, chr1-CpG: 69/Downstream/73837
Nearby gene
SFPQ(-1611) ;
Nearest cancer related gene
SFPQ(OG, -1611) ;
Upstream sequence
tacaccccgcctccCTTTCCTCTCCTTAACCCTTACCCAGAACAAATTTAATCCTCTTTTCCCACCACCATTCTCTGTCACATCTACTATTCCCAAATCC
Downstream sequence
TGAGCCTGTCACACTATTTCTTGAATGTGACAGGCTCAGGATTTGGGAATAGTAGATGTGACAGAGGCCAGATGCTGATGGTCTGTGTGCAGGAATCAGG
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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