Basic Information
VIS ID
TVIS20001052
Fusion event
HPV-NRAS integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr1
Cytoband
p13.2
Reference genome
End
115249836/114707215 (Hg38)
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/1825086; hsa-mir-1182/Downstream/1852809;
Nearest cancer related gene
NRAS(OG, No orient, 0)
Upstream sequence
gtctcccatccaagtactaaccaggcccgaccctgcttagcttccgagatcagacgagatcgggcgcgttcagggtggtatggccgtagacGCTGAAGGA
Downstream sequence
GGCGCCTGGCTGCCCCAAGAGCCCAGCCCGGCCCGGCCGTGCCCGCCGGATTGCAGCCGACACCGCCAGCCCGGGGCCGCGGGGCTCGGATCGGGGACCC
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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