Basic Information
VIS ID
TVIS20001069
Fusion event
HPV-LOC101927711 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr1
Cytoband
q42.2
Reference genome
GRCh37/hg19
Start
233022470/232886724 (Hg38)
End
233022470/232886724 (Hg38)
Location type
Intronic
Fragile sites / regions
FRA1H
Target gene
LOC101927711
Nearest miRNA
hsa-mir-101-1/Upstream/1866800; hsa-mir-1537/Downstream/737428;
Nearest TSS
ENST00000473358/Upstream/81832; ENST00000479125/Downstream/63881;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/80763, chr1-CpG: 40/Downstream/63721
Upstream sequence
GTTTTAGATGACAATAATCTGCAGATATAGTTTGTGTGAGAGACATCTTACTCTGTAAATCATTTGGAGAGACACCTGCAATATTTCATAGAGATGAAAA
Downstream sequence
CTTATTTCTAGTGAACTTATACGCTTGTCAATAAATAGTAACTTTAAAAATTTAGTTGATTGTAAATGACCTTTTCTAATCAGGTAGTAATTATGACTGT
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
Curate