Basic Information
VIS ID
TVIS20001071
Fusion event
HPV-chr1:q43 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr1
Cytoband
q43
Reference genome
GRCh37/hg19
Start
241529518/241366218 (Hg38)
End
241529518/241366218 (Hg38)
Nearest miRNA
hsa-mir-101-1/Upstream/233872; hsa-mir-3124/Downstream/1979958;
Nearest TSS
ENST00000473358/Upstream/8988; ENST00000444330/Downstream/58074;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/8728, chr1-CpG: 28/Downstream/58083
Nearby gene
RGS7(-8944) ;
Upstream sequence
CTTTTCCAAGCTCCCTGAAATCCCCACCTGGAGTCATTTGCCTTTTAATGGGACATTTGGTGAAGCTGCTAGCCTGAGCTGAGTGAGATCATTGTAGAGA
Downstream sequence
AGGTTTATCATTCTCAGAAGCTGTCAAGATGATTAAATAGGGCTGTTGTGCAATAGGTCCCAAGCAACAGCAGCAATAGagtgggataaacactggactg
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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