Basic Information
VIS ID
TVIS20001143
Fusion event
HPV-LOC107984606 integration
Validated
No
Detection method
HIVID
Data source
Curated
Sample type
Tumor
Disease
Not given
Quality evaluation
Normal
Reported year
2015
PubMed ID
25581428
Virus Sequence
Virus name
HPV
Reference genome
NC_001526.2;HQ537777.1
Host Sequence
Chromosome
chr13
Cytoband
q33.2
Reference genome
GRCh37/hg19
Start
105447774/104795423 (Hg38)
End
105447774/104795423 (Hg38)
Location type
Intronic
Target gene
LOC107984606
Nearest miRNA
hsa-mir-1297/Upstream/2749419; hsa-mir-1267/Downstream/2735748;
Nearest TSS
ENST00000623511/Upstream/1370223; ENST00000640578/Downstream/670444;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/1949010, chr13-CpG: 29/Downstream/1697637
Upstream sequence
TTAATGTTGCCTTTCATATTGTAAATATGTGGCATTGTGGCATCCCACCTTAGCTGCTGGTATTTTCCACAGTTCTAGTAAATTTGACTTTTTATTCCCC
Downstream sequence
TGAAAGCAAATTGTTTCACAATAAATCTAAATCCAAATTGAGGGATTCTAGCACACATCACATTTAGGTAAATGAGTTTCCCATGATATTAACTGATTTG
Reference
Hu, Z., et al. Genome-wide profiling of HPV integration in cervical cancer identifies clustered genomic hot spots and a potential microhomology-mediated integration mechanism. Nat Genet,2015, 47(2): 158-163.
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